Tuesday, January 11, 2011

sMiLeS :)

SMILES - A Simplified Chemical Language 


SMILES (Simplified Molecular Input Line Entry System) is a line notation (a typographical method using printable characters) for entering and representing molecules and reactions.

Some examples are:


SMILESNameSMILESName
CC ethane [OH3+] hydronium ion
O=C=O carbon dioxide [2H]O[2H] deuterium oxide
C#N hydrogen cyanide [235U] uranium-235
CCN(CC)CC triethylamine F/C=C/F E-difluoroethene
CC(=O)O acetic acid F/C=C\F Z-difluoroethene
C1CCCCC1 cyclohexane N[C@@H](C)C(=O)O L-alanine
c1ccccc1 benzene N[C@H](C)C(=O)O D-alanine


Reaction SMILESName
[I-].[Na+].C=CCBr>>[Na+].[Br-].C=CCI displacement reaction
(C(=O)O).(OCC)>>(C(=O)OCC).(O) intermolecular esterification


USES for SMILES are:
  • Keys for database access
  • Mechanism for researchers to exchange chemical information
  • Entry system for chemical data
  • Part of languages for artificial intelligence or expert systems in chemistry

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